Software

compdiagTools - a toolbox for microarray analysis

DCOEX - finding groups of differentially coexpressed genes

DOCVAL - Documentation by value

Guided Clustering - Combined analysis of a microarray and experimental data

JALI - Jumping Alignments

nem - Nested Effects Models

transApproxs - Transitive Approximations

TWILIGHT - Estimating the false discovery rate

Please note:

more detailed information about each tool are in preparation...

ReseqChip - automates the process of resequencing using multiple local context probe

INCA - peak alignment tool, allows for a widely automated preprocessing of GCxGC-TOF-MS data

Please note:

more detailed information about each tool are in preparation...

adSplit - find annotation-driven splits

OrderedList - Similarities of ordered gene lists

SHARCGS - Short-read assembler based on robust contig extension for genomic sequencing

StAM - Structured Analysis of Microarrays

Please note:

more detailed information about each tool are in preparation...

R-script for Data Normalization of 1H-NMR Metabolite Fingerprinting Datasets (Hochrein et al, 2015)

MetaboQuant - Computational Analysis of Protein-Protein Complexes

Please note:

more detailed information about each tool are in preparation...

miRA - adaptable novel miRNA identification in plants using small RNA sequencing data [paper] [source]

aIDA - A statistical approach to virtual cellular experiments; improved causal discovery using accumulation IDA (aIDA)? [paper] [source]

Please note:

more detailed information about each tool are in preparation...